PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G12870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 475aa    MW: 51926.3 Da    PI: 4.8247
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G12870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.2e-316110196
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavgvilklq 84 
                      +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ +          p +++ da+sslvyeA+ r+rdPvyG+ + +++lq
  ONIVA08G12870.1   6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCNQ-VSQLQ 98 
                      7*********************************************976555555555588899**********************76.67899 PP

           DUF260  85 qqleqlkaelal 96 
                       ql+ ++ e+  
  ONIVA08G12870.1  99 MQLAVAQGEILC 110
                      999988887755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.9395115IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-316108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL  60
PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CNQVSQLQMQ LAVAQGEILC SQMQHCDGNE  120
NEENVVPRRR QVLLPAQLVS PYGVDTVCRR REPGTTQRKI LGYATGCHLP SPLVPRSAGP  180
CSGFPSIVGS EGVLREGGAG MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP  240
SGEEQKGENK ANAFGKDEKP TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI  300
DDTLEHREEG VAEVDMQDKL TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV  360
GRIVISNSPN GNQDLLLDLK GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV  420
EGTLDGFTFD SDEEGDKLPE PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0593400.0AK059340.1 Oryza sativa Japonica Group cDNA clone:001-026-B04, full insert sequence.
GenBankAK2431990.0AK243199.1 Oryza sativa Japonica Group cDNA, clone: J100040F14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626349.11e-168PREDICTED: DNA-binding protein BIN4 isoform X3
TrEMBLA0A0E0IAU50.0A0A0E0IAU5_ORYNI; Uncharacterized protein
STRINGBGIOSGA000185-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP638944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-52LBD family protein